Due to the hyper 9's design that integrates two types of motor designs into one, it's about as efficient as high-voltage OEM motors like the Nissan Leaf motor and others.
How long it'll take to charge depends on the charger and the total battery capacity you're using. Most people use a 6.6kw charger, that will charge a Tesla pack of 5 modules (with a low voltage hyper 9) from 0-100 in about 4 hours. With 5 modules in a civic I'd expect somewhere around 80-100 miles of range.
You can double that (10 modules) to roughly double the range. Or if you want something in between, you can use 7 modules with a hyper 9 HV, for probably 120-140 miles of range.
The hyper 9 is designed to be used with a transmission, but not everyone uses the clutch and flywheel. There are kits available (CanEV.com) that make it easy just bolt the motor right to the transmission and keep a clutch + flywheel. If you want to go clutch-less, your best bet would be to buy the CanEV kit and fabricate an adapter that attaches the motor coupler and the transmission input shaft.
If you mean strictly direct drive (like motor direct to differential, no transmission), I wouldn't recommend it as the hyper 9 can't rev up as high as OEM EV motors so you may be artificially limiting your top speed.