If I understand the nomenclature correctly. You are saying build the two 180 packs and then parallel them together.
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I think this is what Wolf is proposing but with four "Wolf packs" but he has some control circuit boards in there.
This would work with modules as is and would be easiest...
I'm saying that's your approach #2, and that it makes sense as a possible configuration... not that I think it's better or worse than the other approach. Yes, it is like what Wolftronix chose.
I read some where that it was best to do the parallel at lowest level. But that would mean 4 parallel cells for one BMS unit. It would also men taking the modules apart and reordering them- something I prefer not doing.
That would be your approach #1.
Production EVs tend to parallel at the lowest level, including the original configuration of this Leaf battery, and all Teslas. I assume that this is done to minimize the effect of a single cell failure.
If you want to parallel at the lowest level, I still don't see why there would be any need to open the modules, or even separate the pairs of modules. It doesn't look like there is any internal electrical connection between the two modules in a pair. The BMS might be more a challenge: as you said, it would only have 48 units to manage, but they would each have double the capacity expected by the BMS design... and the wires of the BMS harness wouldn't be the right length.